PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005553.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YB
Protein Properties Length: 196aa    MW: 21114.4 Da    PI: 6.0197
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005553.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB184.29.9e-5825120297
        NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                  reqdr+lPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrkt+ngddllwa++tlGfedyveplk+yl+k+re+egek
  CCG005553.1  25 REQDRLLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTVNGDDLLWAMTTLGFEDYVEPLKIYLQKFREMEGEK 120
                  89********************************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.4E-5421123IPR009072Histone-fold
SuperFamilySSF471131.86E-4027124IPR009072Histone-fold
PfamPF008081.6E-273094IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.3E-215876No hitNo description
PROSITE patternPS0068506177IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.3E-217795No hitNo description
PRINTSPR006153.3E-2196114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MADSDNESGE QNNSNTNYST ETSPREQDRL LPIANVSRIM KKALPANAKI SKDAKETVQE  60
CVSEFISFIT GEASDKCQRE KRKTVNGDDL LWAMTTLGFE DYVEPLKIYL QKFREMEGEK  120
TAAMGIVRQG DQRDGAAGDG GVVNSGNPGG GFGGGGGNMY VGMQSSMAMM GHHHYQHRHP  180
GNMYGPGSGA SSGRPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-4825115292Transcription factor HapC (Eurofung)
4g92_B3e-4825115292Transcription factor HapC (Eurofung)
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2101290.0AC210129.1 Populus trichocarpa clone POP009-F11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011040164.11e-146PREDICTED: nuclear transcription factor Y subunit B-3-like
SwissprotO233101e-71NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLB9IH151e-134B9IH15_POPTR; Uncharacterized protein
STRINGPOPTR_0016s00780.11e-134(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.13e-70nuclear factor Y, subunit B3